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Home > Blog > Pumpkin Protein Recipes

Mini Pumpkin Pies (Gluten Free, High Protein Recipe)

Updated: Sep 2, 2025 · Published: Nov 24, 2015 · By Andréa Marchese · This post may contain affiliate links · Leave a Comment

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These healthy, gluten-free, and sugar-free mini pumpkin pies are packed with protein, making them a perfect addition to your Thanksgiving dinner or any fall gathering. Also perfectly portioned for meal prep!

seven mini pumpkin pies with fall shaped pie crust cookies on them next to a bright orange mini pumpkin on a flower etched glass cake stand

Ingredients

Crust:

  • 2 ¼ cups almond flour (280g)
  • ¾ cups vanilla pea protein blend (84g)
  • 4 large egg whites (132g) *save one of the yolks
  • 1 ½ tablespoons coconut oil, melted (21g)

Filling:

  • 1 can pumpkin puree 15oz
  • 2 large eggs whole
  • ½ cup whey protein concentrate 45g
  • ⅔ cup water 5.3 oz, 160ml
  • 2 teaspoons pumpkin pie spice
  • ½ teaspoon sea salt

Glaze for crust cookies:

  • yolk of one large egg (you'll use half)

Vanilla rice protein would be a good sub for the pea protein in this crust recipe. These plant-based protein powders will give the crust a melt-in-your-mouth crumble. Using whey or whey blends may work technically, but the will have a different (probably undesirable) mouthfeel.

Whey protein makes the pie filling creamy, and I don't recommend other types of protein powder for the filling.

Make crustless pumpkin mini pies: Use paper cupcake liners in the pan instead of preparing the protein pie crust.

Make pumpkin pie bites: Use a smaller round cookie cutter and mini tart shells or a mini muffin tin.

Equipment Needed 

Kitchen scale - I recommend using a kitchen scale for best results and easy clean up.

Oven thermometer - I always bake with an oven thermometer! You'd be surprised at how off-temperature ovens can be. Once you start baking with an oven thermometer, you'll never go back.

Mixing bowls: You'll need a large mixing bowl for the pie dough, a medium bowl for the filling, and small mixing bowls for the egg and oil and for the egg wash. I love this mixing bowl set for the non-slip base and smooth inner surface (easy to clean).

Disposable gloves (optional): I like to wear these disposable gloves when getting my hands in dough.

Parchment Paper - Using parchment paper helps prevent the dough sticking to th roller when rolling out your dough.

Rolling Pin - Using a rolling pin to roll out the pie dough helps it to roll evenly.

Round Cookie Cutter - A round cookie cutter or the top of a small bowl will help you cut perfect 4-inch rounds for the crust.

Cupcake Tin - A cupcake pan is perfect for creating individual pumpkin pies that are easy to portion and serve.

Decorative Cookie Cutters - I used these fall cookie cutter/stampers - for the decorative pie crust pieces on top of the mini pies.

pie crust cookies in fall shapes (turkey, acorn, leaves)
Pie Crust Cookies

Instructions

Prepare the Crust

Mix the almond flour and pea protein in a large bowl.

In a separate small bowl, mix the egg whites and melted coconut oil. (Save one egg yolk for later.)

Pour the wet ingredients into the dry, mixing well to form a dough (use your hands if necessary).

If the dough is too dry, add a little bit more egg white until it holds together.

Roll the Dough

Preheat your oven to 325°F (163°C).

Roll out the dough between two sheets of parchment paper.

Using a round cookie cutter or small bowl, cut 12 circles about 4 inches in diameter.

Press each dough circle into the muffin tin to form the mini pie shells.

Don't worry if the dough breaks-just press it back together with your fingers.

Prepare the Filling

In a medium bowl, combine the canned pumpkin puree and eggs.

In a separate small bowl, combine the whey protein and water.

Add to the pumpkin and eggs, and mix well.

Add pumpkin pie spice, and sea salt. Mix well until smooth and creamy.

Assemble the Pies and Bake

Spoon the pumpkin pie filling into each mini pie shell.

Bake the mini pies for about 20 minutes.

While they bake, prepare the crust cookies by rolling out any leftover dough and cutting small shapes using the decorative cookie cutters.

In a small bowl, beat the egg yolk and brush a thin layer on each crust cookies.

After the mini pies have baked for 20 minutes, place one crust cookie on top of each pie, then bake for an additional 8-10 minutes or until golden brown.

Cool and Serve

Remove from the oven and place the pan on a wire rack to cool.

The little pies may look puffy when removed from oven, but they will settle once cooled.

Serve with a sprinkle of cinnamon or a dollop of whipped cream for the perfect finishing touch!   

seven full and one half eaten mini pumpkin pies with fall shaped pie crust cookies on them on a sheet of unbleached parchment paper
Healthy Mini Pumpkin Pies

The recipe for this mini version of homemade pumpkin pie is very similar to our (full size) Protein Pumpkin Pie recipe. 

If you enjoy this recipe for individual pumpkin pies, you may also enjoy our Healthy Pumpkin Pie Bars and Individual Pumpkin Cheesecake. They are both gluten free (as are all the recipes on this site!).

FAQ

Can I use another type of protein powder in the filling?

No, the whey protein is essential for the creamy texture of the filling. I don't suggest using plant-based proteins here, as they would likely create a grainy mouthfeel. A whey/casein blend should work, although you will likely need to lessen the bake time.

What can I use instead of almond flour for the crust?

I think graham cracker crumbs would be your best bet if you aren't going to use almond flour. Other nut flours like hazelnut meal would also work.

Can I make these pies ahead of time?

Yes, you can make them up to two days in advance and store them in the refrigerator in an airtight container.

Do I need a food processor to make the crust?

No, but it can help to mix the almond flour and protein powder more thoroughly.

What size should the crust circles be?

About 4 inches in diameter works best for cupcake-sized mini pies.

Can I use pumpkin pie filling instead of pumpkin puree?

You can, but note that it already has pumpkin spice in it (as well as sugar). To control the sugar and spices, I suggest using 100% pumpkin puree.

How long do these pies last in the refrigerator?

They stay fresh for about five days when stored in an airtight container.

Do I need a rolling pin for the dough?

A rolling pin ensures even thickness for your pie crust. But if you don't have one, you can use your hands to press out the dough to the desired thickness.

Can I freeze these pies?

Yes, they freeze well when wrapped in plastic wrap and stored in a freezer-safe container. Thaw at room temperature before serving.

These mini pumpkin pies are a great way to satisfy your pumpkin pie cravings with a healthier twist. Give this recipe a try, and let us know how it goes in the comments!

Recipe

seven mini pumpkin pies with fall shaped pie crust cookies on them next to a bright orange mini pumpkin on a flower etched glass cake stand

Mini Pumpkin Pies (Gluten Free, High Protein Recipe)

Andréa Marchese
Delicious mini pumpkin pies that are gluten-free, high-protein, and sugar-free, with a flaky almond flour crust and a creamy pumpkin filling.
5 from 1 vote
Print Recipe Pin Recipe
Prep Time 30 minutes mins
Cook Time 30 minutes mins
Total Time 1 hour hr
Servings 12 mini pies

Equipment

  • kitchen scale
  • oven thermometer
  • mixing bowls
  • disposable gloves (optional)
  • parchment paper
  • Rolling Pin
  • 4" round cookie cutter or 4" bowl
  • cupcake pan
  • decorative fall cookie cutters

Ingredients

Crust:

  • 2 ¼ cups (280 g) almond flour
  • ¾ cups (84 g) vanilla pea protein blend pea protein blend
  • 4 (132 g) large egg whites *save one of the yolks
  • 1 ½ tablespoons (21 g) coconut oil melted

Filling:

  • 1 15oz can (425 g) pumpkin puree
  • 2 large eggs whole
  • ½ cup (45 g) whey protein concentrate
  • ⅔ cup (160 ml) water
  • 2 teaspoons pumpkin pie spice
  • ½ teaspoon sea salt

Glaze for crust cookies:

  • yolk of one large egg you'll use half

Instructions
 

Prepare the Crust

  • Mix the almond flour and pea protein in a large bowl.
    2 ¼ cups (280 g) almond flour, ¾ cups (84 g) vanilla pea protein blend
  • In a separate small bowl, mix the egg whites and melted coconut oil. (Save one egg yolk for later.)
    4 (132 g) large egg whites, 1 ½ tablespoons (21 g) coconut oil
  • Pour the wet ingredients into the dry, mixing well to form a dough (use your hands if necessary). If the dough is too dry, add a little bit more egg white until it holds together.

Roll the Dough

  • Preheat your oven to 325°F (163°C).
  • Roll out the dough between two sheets of parchment paper.
  • Using a round cookie cutter or small bowl, cut 12 circles about 4 inches in diameter.
  • Press each dough circle into the muffin tin to form the mini pie shells. Don't worry if the dough breaks-just press it back together with your fingers.

Prepare the Filling

  • Mix together pumpkin and eggs.
    1 15oz can (425 g) pumpkin puree, 2 large eggs
  • Separately, mix whey and water. Add to pumpkin and eggs. Mix well.
    ½ cup (45 g) whey protein concentrate, ⅔ cup (160 ml) water
  • Add pumpkin spice and salt. Mix well.
    2 teaspoons pumpkin pie spice, ½ teaspoon sea salt

Assemble the Pies and Bake

  • Spoon the pumpkin pie filling into each mini pie shell.
  • Bake the mini pies for about 20 minutes.
  • While they bake, prepare the crust cookies by rolling out any leftover dough and cutting small shapes using the decorative cookie cutters.
  • Beat the egg yolk and brush a thin layer on each cookie. This gives them a nice shine, and prevents them from looking dry.
    yolk of one large egg
  • After the mini pies have baked for 20 minutes, place one crust cookie on top of each pie, then bake for an additional 8-10 minutes or until golden brown.

Cool and Serve

  • Remove from oven, and let cool on a wire cooling rack. They may look puffy when removed from oven, but will settle once cooled.
  • Enjoy! Store in the refrigerator.

Notes

Ingredient Substitutions
Vanilla rice protein would be a good sub for the pea protein in this crust recipe. These plant-based protein powders will give the crust a melt-in-your-mouth crumble. Using whey or whey blends may work technically, but the will have a different (probably undesirable) mouthfeel.
I don't suggest using plant-based proteins in place of the whey concentrate in the pie filling, as they would likely create a grainy mouthfeel. A whey/casein blend should work, although you will likely need to lessen the bake time.
Recipe Variations
Crustless Pumpkin Mini Pies: Use paper cupcake liners in the pan instead of preparing the protein pie crust.
Pumpkin Pie Bites: Make this recipe into bite-sized pumpkin pies by using a smaller round cookie cutter and mini tart shells or a mini muffin tin.
Storage Info
Store these delicious mini pumpkin pies in an airtight container in the refrigerator for up to five days.
For longer storage, you can freeze them by first wrapping them individually in plastic wrap, then storing in a freezer-safe container for up to three months. To thaw, simply leave them at room temperature for a few hours before serving. 

Nutrition

Serving: 1mini pie | Calories: 240kcal | Carbohydrates: 11g | Protein: 15g | Fat: 15g | Fiber: 3g | Sugar: 3g
Tried this recipe?Please consider leaving a review!

🎃 More high protein pumpkin recipes: 

Try these pumpkin protein pancakes for a high protein breakfast with all the pumpkin spice coziness.

These easy pumpkin protein cookies are a quick and delicious snack for busy fall days.

This keto-friendly high protein pumpkin cheesecake mousse has all the flavor and feel of a pumpkin cheesecake in an easy no-bake snack.

More Pumpkin Protein Recipes

  • sliced loaf of high protein pumpkin bread on a cutting board surrounded by decorative mini pumpkins.
    Protein Pumpkin Bread (Easy, Healthy)
  • piece of pumpkin protein cheesecake topped with sugar free whipped cream, with a forkful of cheesecake.
    Pumpkin Protein Cheesecake (Low Carb Recipe)
  • protein shake background with text overlay: 5 easy protein shakes for weight loss.
    5 Easy Protein Shake Recipes (Great for Weight Loss)
  • pumpkin protein shake next to a mini pumpkin
    Pumpkin Protein Shake Recipe (with Pumpkin Pie Spice)

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andrea at the gym holding cupcakes

Hi, I'm Andréa! I’ve been baking with protein powder since 2013, and I can give you all the top tips for creating delicious high protein snacks, desserts, and more.

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