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    Home > Blog > Protein Desserts > Protein Cake

    Protein Cupcakes (Healthy, Gluten Free Cupcake Recipe)

    Updated: Aug 17, 2024 · Published: Aug 27, 2015 · By Andréa Marchese · This post may contain affiliate links · 4 Comments

    Jump to Recipe
    Close-up of gluten-free high protein cupcakes made with plant-based protein powder, topped with frosting, ideal for healthy baking.
    Close-up of gluten-free high protein cupcakes made with protein powder, topped with frosting, ideal for healthy baking.
    Close-up of gluten-free high protein cupcakes made with protein powder, topped with frosting, ideal for healthy baking.

    These fluffy and delicious vanilla protein cupcakes have no added sugar and make the perfect high protein breakfast, snack, or dessert. This easy recipe can be modified to include chocolate chips, funfetti sprinkles, or any flavorings, and these healthy cupcakes are naturally gluten free. Great for birthdays or any day!

    piece of frosted vanilla cupcake on a fork on an etched glass cake plate with cupcakes behind it.

    The frosting here is a vegan cashew-based frosting, and that can be easily swapped for any of our protein frosting recipes. It's vanilla version of my Cashew Whipped Cream. So good!

    The cupcakes (unfrosted) are low carb, with only 3 grams of carbs and 2g net carbs. And with 10 g protein per cupcake!

    If you're looking for a low fat whey based cupcake recipe, check out these protein cake recipes that are made with whey protein concentrate: chocolate protein cake, chocolate peanut butter snack cake. (You can swap the chocolate whey concentrate for vanilla whey concentrate in both recipes.)

    ​To learn more about baking with different types of protein powder, have a look at my blog post on the best protein powders for baking, and sign up for my free Protein Baking Cheat Sheet.

    Jump to:
    • Ingredients for fluffy high protein cupcakes
    • Equipment Needed
    • How to Make Protein Cupcakes
    • Ingredient Substitutions
    • Additional Topping Ideas
    • Recipe Variations
    • Storage Info
    • FAQ
    • Recipe

    Ingredients for fluffy high protein cupcakes

    Egg Whites

    Egg whites are a great source of protein and help give the cupcakes structure without adding extra fat. If you're using liquid egg whites, please measure in grams rather than using the serving size on the carton.

    Coconut Oil

    Coconut oil provides healthy fats and moisture to the cupcakes, ensuring they are soft and delicious.

    Non-fat Greek Yogurt

    Fat-free Greek yogurt adds protein and moisture, creating a rich texture without the added fat.

    Vanilla Pea Protein Blend

    This plant-based protein powder adds a vanilla flavor and boosts the protein content of the cupcakes.

    Vanilla Bean Powder

    Vanilla bean powder is whole vanilla beans that have been dried and processed into a powder. 

    Vanilla Flavored Stevia 

    Vanilla stevia adds natural sweetness and enhances the vanilla flavor without adding sugar.

    Almond Flour

    Almond flour is a low-carb, gluten-free alternative to traditional flour that adds a subtle nutty flavor.

    Baking Powder

    Baking powder helps the cupcakes rise and become fluffy.

    Raw Cashews

    Used in the frosting, raw cashews provide a creamy base that’s rich in healthy fats.

    The recipe card below has all the measurements!

    Equipment Needed

    • kitchen scale - highly recommended for accurate measurements and easy cleanup
    • oven thermometer - you'd be surprised at how off-temperature ovens can be! I never bake without an oven thermometer.
    • Mixing bowls - I like this set of mixing bowls because of the rubber base and smooth inner surface.
    • Whisk or electric mixer
    • 6 small silicone muffin cups (cupcake size) or cupcake pan
    • Spoon or rubber spatula 
    • High-speed blender - if you're making the cashew frosting

    How to Make Protein Cupcakes

    Making the Frosting

    1. Drain and rinse the soaked cashews.

    2. Blend the cashews with filtered water and vanilla flavored stevia until smooth. Adjust water as needed for consistency.

    3. Refrigerate the frosting until ready to use.

    Making the Cupcakes

    1. Preheat your oven to 325°F (163°C).

    2. In a large bowl, combine egg whites, coconut oil, and non-fat Greek yogurt until smooth.

    3. Add vanilla pea protein blend, vanilla bean powder, vanilla flavored stevia, almond flour, and baking powder. Mix until smooth and thick.

    4. Spoon the batter into six small silicone muffin cups.

    5. Bake for about 20 minutes, or until a toothpick inserted into the center comes out clean. (If you're using a metal cupcake/ muffin tin instead of silicone cups, check the cupcakes a few minutes earlier.)

    6. Let the cupcakes cool completely to room temperature before frosting.

    Ingredient Substitutions

    Coconut Oil: Can be replaced with any oil that works for baking, like light olive oil, almond oil, avocado oil, or vegetable oil.

    Non-fat Greek Yogurt: Plant-based yogurt would also work here.

    Vanilla Protein Powder: This recipe only works with plant-based protein powders (pea protein or pea protein blends). I don't recommend other types of protein powder.

    If you're looking for a low fat whey based cupcake recipe, check out these protein cake recipes that are made with whey protein concentrate: chocolate protein cake, chocolate peanut butter snack cake. (You can swap the chocolate whey concentrate for vanilla whey concentrate in both recipes.)

    Vanilla Bean Powder: This recipe was originally developed as a vanilla bean cupcake, but of course you can substitute vanilla extract (½ teaspoon) in place of the vanilla bean powder. If you'd like to use the seeds of a vanilla bean, it would be seeds of ¼ vanilla bean. 

    Vanilla Flavored Stevia: Any stevia (liquid or powder) would be a great substitute here. For stevia powder, I'd use ⅛ teaspoon. Or use your favorite sweetener. Low glycemic coconut sugar would be delicious here (try 2 - 4 tablespoons). Liquid stevia comes in many flavors, so this is an opportunity to swap flavors, if you wish!

    Almond Flour: Hazelnut flour (hazelnut meal) would be a good substitute here, but I do not recommend coconut flour, all-purpose flour, or gluten free flour blends, as these bake very differently than almond flour.

    Raw Cashews: I have other frosting recipes: protein frostings. Choose your favorite! 

    Additional Topping Ideas

    If our selection of protein frostings isn't quite what you're looking for, try these topping ideas for these delicious cupcakes:

    • Drizzle warmed almond butter or peanut butter over the cupcake at time of serving
    • Drizzle maple syrup on the cupcakes for a sweeter protein treat
    • Top with no-sugar-added fruit spreads, like strawberry or raspberry
    • Drizzle melted sugar free chocolate before serving

    Recipe Variations

    Chocolate Chip Protein Cupcakes: Add 2 tablespoons sugar free chocolate chips to the batter before baking.

    Birthday Cake Protein Cupcakes: Add 2 tablespoons sprinkles to the batter before baking.

    Banana Protein Cupcakes: Replace the Greek yogurt with mashed banana for added sweetness and flavor.

    Chocolate Protein Cupcakes: Replace the vanilla protein powder with chocolate protein powder (plant-based), and add 2 tablespoons cocoa powder and 1-2 tablespoons water as needed for cake batter consistency.

    Storage Info

    Store your protein cupcakes in an airtight container in the refrigerator for up to a week. For longer storage, freeze the cupcakes (without frosting) and thaw as needed.

    FAQ

    Do I have to use vegan protein powder, or can I use a different protein powder?

    This recipe is designed for a vegan protein blend only (pea protein or pea protein blends). If you're looking for a whey based cupcake recipe, check out these protein cake recipes that are made with whey protein concentrate: chocolate protein cake, chocolate peanut butter snack cake. (You can swap the chocolate whey concentrate for vanilla whey concentrate in both recipes.)

    How many grams of protein are in each cupcake?

    Each cupcake contains approximately 10 grams of protein.

    Can I make these cupcakes vegan?

    I don't think flax eggs would work for the egg whites, so the best we can do is make dairy-free protein cupcakes by choosing plant-based yogurt.

    Are these cupcakes low in carbs?

    Yes, there are 3 grams total carbs per unfrosted cupcake, 2 g net carbs.

    Can I use a cupcake/ muffin pan instead of silicone cups?

    Yes, just make sure to use paper cupcake liners and check the cupcakes a few minutes earlier than with silicone cups.

    How long do these cupcakes last?

    Stored in an airtight container in the fridge, they last up to a week. They can also be frozen (unfrosted) for longer storage. In this case, wrap them individually in plastic wrap, then store them in a freezer-safe airtight container.

    Can I use a food processor to make the frosting?

    Yes, a food processor or high-speed blender works well for making the cashew frosting.

    Can I make mini cupcakes with this recipe?

    Yes, simply adjust the baking time.

    These protein cupcakes are not only delicious but also packed with healthy ingredients that make it totally reasonable to have vanilla cupcakes anytime!

    Whether you’re aiming to increase your protein intake or looking for a healthier dessert option, these vanilla protein cupcakes are a great choice. Happy baking!

    And if you like this recipe, you may also enjoy this collection of vanilla protein powder recipes and this collection of protein donut recipes.

    Recipe

    piece of frosted vanilla cupcake on a fork on an etched glass cake plate with cupcakes behind it.

    Protein Cupcakes (Healthy, Gluten Free Cupcake Recipe)

    Andréa Marchese
    This easy recipe for delicious vanilla protein cupcakes has protein powder and no added sugar. Perfect high protein dessert or snack!
    4.34 from 3 votes
    Print Recipe Pin Recipe
    Prep Time 10 minutes mins
    Cook Time 20 minutes mins
    Total Time 30 minutes mins
    Servings 6 cupcakes

    Ingredients

    Cupcakes:

    • 4 large egg whites 132g
    • 2 teaspoons coconut oil 10ml or 9g
    • ¼ cup non-fat plain Greek yogurt 57g
    • ½ cup vanilla pea protein blend 56g
    • ¼ teaspoon vanilla bean powder 1.2ml
    • ⅛ teaspoon vanilla flavored stevia 0.6ml (~12 drops)
    • 2 tablespoons almond flour 14g
    • ½ teaspoon baking powder 5ml

    Frosting:

    • 1 cup raw cashews, soaked in filtered water for 4 hours or more 122g
    • ⅓ cup filtered water 80ml
    • ¼ teaspoon vanilla flavored stevia 1.2ml

    Instructions
     

    • Begin to make the frosting by draining and rinsing the cashews.
    • Blend the cashews with the filtered water and stevia until smooth. (Depending on your blender, you may need a little more water and you may need to scrape the sides down a couple of times.)
    • Refrigerate until ready to use.
    • Preheat oven to 325F (163C).
    • Combine egg whites, oil, and yogurt until smooth (with whisk or electric mixer).
    • Add remaining ingredients, and mix until smooth. Batter will be thick.
    • Spoon batter into 6 small silicone muffin cups.
    • Bake for about 20 minutes, until firm and a toothpick comes out clean.
    • Let cool, then frost and enjoy!

    Notes

    A note about substitutions: because each type of protein powder has a distinct flavor and texture when baked, I would not try substituting different types of protein powders in this recipe (other than a pea protein blend). See my Recipe Basics video for examples of what goes wrong when you use the wrong protein powder.
    The macros for one unfrosted cupcake are:
    Prot: 10g, Carbs: 3g (1g fiber, 1g sugar), Fat: 3g, Cal: 86

    Nutrition

    Serving: 1cupcake | Calories: 192kcal | Carbohydrates: 9g | Protein: 10g | Fat: 11g | Fiber: 1g | Sugar: 2g
    Tried this recipe?Please consider leaving a review!

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    Comments

    1. Andréa Marchese says

      December 12, 2023 at 9:06 am

      Hi Ivy, yes, any vanilla pea protein or pea protein blend would work here. (Apologies for the late reply.)

    2. Ivy says

      October 07, 2023 at 1:20 am

      PLNT protein powder is not available anymore. Can we sub any pea protein condentrate?

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    andrea at the gym holding cupcakes

    Hi, I'm Andréa! I’ve been baking with protein powder since 2013, and I can give you all the top tips for creating delicious high protein snacks, desserts, and more.

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